STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1326Hypothetical protein; Organization of plasma membrane. (598 aa)    
Predicted Functional Partners:
RB1325
ABC-type multidrug transport system, ATPase component; PMID: 2229036 best DB hits: BLAST: pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp; E=2e-36 gb:AAK06094.1; AE006429_12 (AE006429) ABC transporter ATP binding; E=8e-33 gb:AAG19180.1; (AE005015) ABC transporter, ATP-binding protein; E=1e-32 COG: sll0489; COG1131 ABC-type multidrug transport system, ATPase; E=2e-37 PFAM: PF00448; SRP54-type protein, GTPase domai; E=0.041 PF00693; Thymidine kinase from herpesviru; E=0.88 PF01078; Magnesium chelatase, subunit Chl; E=0.8.
       0.773
RB1323
Probable MFS transporter; PMID: 9529885 best DB hits: BLAST: pir:A83308; probable MFS transporter PA2701 [imported] - Pseudomonas; E=1e-60 pir:T50939; DitE protein [imported] - Pseudomonas abietaniphila; E=4e-46 pir:H83212; conserved hypothetical protein PA3465 [imported] -; E=1e-42 COG: PA2701; COG0477 Permeases of the major facilitator superfamily; E=1e-61.
       0.570
RB1324
Hypothetical protein.
       0.570
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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