Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB13281Hypothetical protein-signal peptide and transmembrane prediction. (513 aa)    
Predicted Functional Partners:
RB13283
Hypothetical protein.
       0.773
RB13278
Hypothetical protein-transmembrane prediction.
       0.598
RB13286
Hypothetical protein.
       0.534
RB13290
Hypothetical protein-transmembrane prediction.
       0.534
outD
General secretion pathway protein D (outD); PMID: 8326859 best DB hits: BLAST: pir:S32858; outD protein - Erwinia carotovora ----- embl:; E=2e-25 swissprot:P31701; GSPD_ERWCA GENERAL SECRETION PATHWAY PROTEIN D; E=2e-25 gb:AAA58785.1; (L33796) EpsD [Vibrio cholerae]; E=1e-22 COG: hofQ; COG1450 General secretory pathway protein D; E=4e-23 PFAM: PF00263; Bacterial type II and III secretion; E=1e-45.
       0.437
RB13294
Hypothetical protein-transmembrane prediction.
       0.437
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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