Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB13323Hypothetical protein-transmembrane prediction. (45 aa)    
Predicted Functional Partners:
RB13324
Hypothetical protein-transmembrane prediction.
       0.773
RB13319
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.572
RB13316
Hypothetical protein-signal peptide and transmembrane prediction.
       0.407
RB13317
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: pir:S76130; hypothetical protein - Synechocystis sp. (strain PCC; E=0.002 PFAM: PF00981; Rotavirus RNA-binding Protein 53 (N; E=0.37.
       0.407
RB13318
Hypothetical protein.
       0.407
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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