Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
RB13325Hypothetical protein-transmembrane prediction. (88 aa)    
Predicted Functional Partners:
RB13327
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.697
RB13329
Hypothetical protein.
       0.634
RB13330
Probable O-linked GlcNAc transferase-putative TPR-containing transmembrane protein; Best DB hits: BLAST: gb:AAF26789.1; AC016829_13 (AC016829) putative O-linked GlcNAc; E=7e-08 gb:AAF51432.1; (AE003587) BcDNA:GH12144 gene product [Drosophila; E=3e-05 pir:S74806; hypothetical protein sll1628 - Synechocystis sp. (strain; E=2e-04 COG: sll1628; COG0457 TPR-repeat-containing proteins; E=2e-05 PFAM: PF02516; Oligosaccharyl transferase STT3 subu; E=0.29 PF00515; TPR Domain; E=0.03.
       0.634
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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