STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13330Probable O-linked GlcNAc transferase-putative TPR-containing transmembrane protein; Best DB hits: BLAST: gb:AAF26789.1; AC016829_13 (AC016829) putative O-linked GlcNAc; E=7e-08 gb:AAF51432.1; (AE003587) BcDNA:GH12144 gene product [Drosophila; E=3e-05 pir:S74806; hypothetical protein sll1628 - Synechocystis sp. (strain; E=2e-04 COG: sll1628; COG0457 TPR-repeat-containing proteins; E=2e-05 PFAM: PF02516; Oligosaccharyl transferase STT3 subu; E=0.29 PF00515; TPR Domain; E=0.03. (588 aa)    
Predicted Functional Partners:
RB13329
Hypothetical protein.
       0.773
RB13327
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.708
RB2086
Similar to O-GlcNAc transferase; PMID: 10617197 best DB hits: BLAST: gb:AAC25927.2; (AC004681) putative O-GlcNAc transferase; E=1e-05 gb:AAB71463.1; (AC000098) Contains similarity to Rattus O-GlcNAc; E=3e-05 pir:T02544; hypothetical protein T26B15.1 - Arabidopsis thaliana; E=8e-05 COG: BH1262; COG0457 TPR-repeat-containing proteins; E=3e-04 PFAM: PF00515; TPR Domain; E=0.06.
 
 
 0.687
RB13325
Hypothetical protein-transmembrane prediction.
       0.634
RB10541
Similar to O-linked GlcNAc transferase-putativeTPR repeat containing protein; Best DB hits: BLAST: gb:AAF26789.1; AC016829_13 (AC016829) putative O-linked GlcNAc; E=1e-05 swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=3e-05 gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=3e-05 COG: TP0468; COG0457 TPR-repeat-containing proteins; E=7e-04 PFAM: PF00515; TPR Domain; E=0.00012.
 
     0.539
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
 
     0.531
RB3571
Probable TolB protein [Precursor]; PMID: 8921895 best DB hits: BLAST: swissprot:P44677; TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:; E=4e-04 pir:JC5213; tolB protein - Haemophilus influenzae -----gb:; E=0.001 pir:F82625; TolB protein precursor XF1897 [imported] - Xylella; E=0.001 COG: HI0382; COG0823 Periplasmic component of the Tol biopolymer transport; E=4e-05.
  
     0.531
tolB-2
Probable TolB protein, protein/colicin/DNA uptake system; PMID: 1683466 PMID: 8550462 best DB hits: BLAST: swissprot:O84604; TOLB_CHLTR TOLB PROTEIN PRECURSOR -----pir:; E=0.006 pir:F81653; tolB protein, probable TC0888 [imported] - Chlamydia; E=0.014 pir:E75551; probable acyl-peptide hydrolase - Deinococcus radiodurans; E=0.020 COG: CT599; COG0823 Periplasmic component of the Tol biopolymer transport; E=5e-04 DR0165; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.002 HI0382; COG0823 Periplasmic component of the Tol biopolymer transport; E=0.005.
  
     0.530
RB6671
Conserved hypothetical protein; PMID: 98151343 best DB hits: BLAST: gb:AAF55179.1; (AE003708) CG5038 gene product [Drosophila; E=4e-10 gb:AAF26789.1; AC016829_13 (AC016829) putative O-linked GlcNAc; E=4e-09 ddbj:BAB21885.1; (AB055261) hypothetical protein [Macaca; E=2e-08 COG: MTH72; COG0457 TPR-repeat-containing proteins; E=4e-07 PFAM: PF00515; TPR Domain; E=1.6e-05.
 
 
 0.527
RB10924
Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
   
 0.526
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.