STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1384Hypothetical protein. (177 aa)    
Predicted Functional Partners:
RB1386
Similar to nucleoside hydrolase; PMID: 10984043 best DB hits: BLAST: pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.062 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.006 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.52.
       0.709
RB1389
Hypothetical protein.
       0.709
RB1390
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.709
RB1391
Hypothetical 317 kDa protein-putative nucleoside-diphosphate sugar epimerase; PMID: 11206551 best DB hits: BLAST: swissprot:Q10403; YM16_MYCTU HYPOTHETICAL 31.7 KDA PROTEIN RV2216; E=9e-44 swissprot:P77775; YFCH_ECOLI HYPOTHETICAL 32.7 KDA PROTEIN IN; E=2e-42 gb:AAG57433.1; AE005462_8 (AE005462) putative sugar nucleotide; E=4e-42 COG: Rv2216; COG1090 Predicted nucleoside-diphosphate sugar epimerases; E=8e-45.
       0.709
rpoD
Probable RNA polymerase sigma 70; PMID: 10548737 best DB hits: BLAST: ddbj:BAA84590.1; (AB003084) RNA polymerase sigma 70 [Helicobacter; E=1e-14 swissprot:Q9ZMY3; RPSD_HELPJ RNA POLYMERASE SIGMA FACTOR RPOD; E=2e-14 gb:AAB81010.1; (U83703) RNA polymerase principal sigma factor; E=2e-14 COG: jhp0081; COG0568 DNA-directed RNA polymerase sigma subunits; E=1e-15 PFAM: PF00140; Sigma-70 factor; E=8.8e-19.
       0.709
RB1394
Hypothetical protein.
       0.565
RB1395
Similar to DNA-binding protein; PMID: 8843436 best DB hits: BLAST: embl:CAB56371.1; (AL118514) putative DNA-binding protein; E=0.089 embl:CAC22757.1; (AL512944) hypothetical protein SC8D11.40; E=0.48 gb:AAD14631.1; (AF102623) trimethylamine corrinoid protein MttC; E=0.64 PFAM: PF02310; B12 binding domain; E=0.11.
       0.410
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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