STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1461Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 8969502 best DB hits: BLAST: ddbj:BAA06427.1; (D30762) unknown [Bacillus subtilis]; E=0.084 swissprot:P42401; YCKC_BACSU HYPOTHETICAL 17.0 KD PROTEIN IN COMJ; E=0.084 COG: BS_yckC; COG1714 Uncharacterized membrane protein/domain; E=0.008. (184 aa)    
Predicted Functional Partners:
RB1462
Hypothetical protein.
       0.773
RB1463
Hypothetical protein.
       0.572
RB1464
PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=9e-28 swissprot:P50473; ARS_STRPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE; E=4e-26 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=6e-26 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-17 PFAM: PF00884; Sulfatase; E=2.3e-39.
       0.572
RB1458
Hypothetical protein-transmembrane prediction.
       0.541
RB1467
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: BLAST: gb:AAF87662.1; AF223645_1 (AF223645) lipase [uncultured bacterium]; E=0.54 PFAM: PF01738; Dienelactone hydrolase family; E=0.00062.
       0.432
RB1470
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02018; Cellulose binding domain; E=0.61.
       0.432
RB1472
Hypothetical protein-signal peptide prediction.
       0.432
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.