STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1503Hypothetical protein-transmembrane prediction. (415 aa)    
Predicted Functional Partners:
RB1502
Similar to response regulator; PMID: 10524254 PMID: 12004073 best DB hits: BLAST: gb:AAF61932.1; (AF230804) sigma-54 activator protein Act1; E=1e-07 swissprot:Q00934; PILR_PSEAE TYPE 4 FIMBRIAE EXPRESSION REGULATORY; E=1e-06 pir:B70195; response regulatory protein (rrp-2) homolog - Lyme; E=1e-06 COG: PA4547; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-07 BH1808; COG0745 Response regulators consisting of a CheY-like; E=6e-07 DRB0029_1; COG0784 CheY-like receiver domains; E=3e-06 PFAM: PF00072; Response regulator receiver doma; E=4.3e-14.
       0.773
RB1501
Hypothetical protein.
       0.648
RB1495
Best DB hits: BLAST: pir:T34965; probable membrane protein - Streptomyces coelicolor; E=2e-09 gb:AAB06263.1; (L39876) ORF1; PepX [Caldicellulosiruptor; E=4e-04 pir:E75460; conserved hypothetical protein - Deinococcus radiodurans; E=0.002 COG: DR0919; COG1721 Uncharacterized ACR; E=2e-04 PFAM: PF01882; Protein of unknown function DUF58; E=7.1e-20.
       0.482
moxR-2
Methanol dehydrogenase regulatory protein; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=4e-87 pir:T34964; probable regulatory protein - Streptomyces coelicolor; E=6e-81 pir:H72289; hypothetical protein TM1132 - Thermotoga maritima; E=1e-80 COG: BH0604; COG0714 MoxR-like ATPases; E=4e-88 PFAM: PF00004; ATPase family associated with va; E=4.6e-05 PF01078; Magnesium chelatase, subunit Chl; E=8e-14.
       0.482
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.