STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1519Hypothetical protein. (74 aa)    
Predicted Functional Partners:
RB1518
Hypothetical protein.
       0.773
RB1516
Conserved hypothetical protein; PMID: 9403685 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=5e-14 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-11 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=3e-09 COG: BB0175; COG1721 Uncharacterized ACR; E=4e-15 PFAM: PF01882; Protein of unknown function DUF; E=8.2e-16.
       0.737
lolD
Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.737
RB1520
Hypothetical protein.
       0.572
gspG
Similar to general secretion pathway protein G [precursor]; PMID: 8326859 best DB hits: BLAST: gb:AAF36472.1; AF127982_2 (AF127982) GspG [Burkholderia cepacia]; E=1e-04 ddbj:BAB18792.1; (AB050004) GspG [Burkholderia cepacia]; E=1e-04 gb:AAC83358.1; (AF092918) outer membrane secretion protein T; E=3e-04 COG: PA3101; COG2165 General secretory pathway proteins G and H and; E=2e-04 PFAM: PF00114; Pilin (bacterial filament); E=0.16.
       0.572
RB1523
Hypothetical protein.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.