STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1535Hypothetical protein. (439 aa)    
Predicted Functional Partners:
RB1533
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB55728.1; (AL117387) hypothetical protein SCF41.25; E=1e-13 ddbj:BAA87752.1; (AB016260) Hypothetical gene [Agrobacterium; E=3e-06.
 
   
 0.870
RB12035
Hypothetical protein.
 
     0.795
RB5763
Hypothetical protein-signal peptide prediction; PMID: 11481431 best DB hits: BLAST: embl:CAC18704.1; (AL451182) hypothetical protein [Streptomyces; E=0.12.
  
     0.657
RB7476
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.625
RB12038
Best DB hits: BLAST: ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=8e-91 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=5e-84 embl:CAB88965.1; (AL353864) putative oxidoreductase; E=3e-46 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=7e-92 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=7e-36 PF02894; Oxidoreductase family, C-termi; E=6.8e-06.
  
     0.593
RB24
Best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=0.13 embl:CAB94635.1; (AL359215) putative secreted glycosyl hydrolase; E=0.26 PFAM: PF00034; Cytochrome c; E=0.35.
  
     0.592
RB1756
Hypothetical protein-transmembrane prediction.
  
     0.581
RB4621
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF00034; Cytochrome c; E=0.003.
  
     0.562
pknA
PMID: 8969512 best DB hits: BLAST: pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=4e-36 swissprot:P54743; PKNA_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=7e-36 swissprot:P71585; PKNA_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=1e-35 COG: Rv0015c; COG0515 Serine/threonine protein kinases; E=1e-36 PFAM: PF00069; Protein kinase domain; E=2.4e-61.
       0.542
RB9557
Hypothetical protein-transmembrane prediction.
  
     0.542
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.