STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgbUProbable hexulose-6-phosphate isomerase; PMID: 8041620 best DB hits: BLAST: pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=8e-07 swissprot:P37679; SGBU_ECOLI PUTATIVE HEXULOSE-6-PHOSPHATE; E=8e-07 swissprot:P39305; SGAU_ECOLI PUTATIVE HEXULOSE-6-PHOSPHATE; E=1e-05 COG: sgbU; COG1082 Predicted endonucleases; E=7e-08 PFAM: PF01319; Cholesterol oxidase; E=0.042. (350 aa)    
Predicted Functional Partners:
RB8266
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAK03329.1; (AE006164) unknown [Pasteurella multocida]; E=1e-04 swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=2e-04 pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=0.002 COG: MJ1311; COG1082 Predicted endonucleases; E=2e-05.
  
  
 
0.926
araB
L-ribulokinase; PMID: 9084180 best DB hits: BLAST: swissprot:P94524; ARAB_BACSU L-RIBULOKINASE ----- pir: D69587; E=3e-97 gb:AAD45717.1; AF160811_5 (AF160811) L-ribulokinase [Bacillus; E=3e-96 embl:CAA61586.1; (X89408) L-ribulokinase [Bacillus subtilis]; E=6e-96 COG: BS_araB; COG1069 Ribulose kinase; E=3e-98 TM0284; COG1070 Sugar (pentulose and hexulose) kinases; E=1e-14 TM1430; COG0554 Glycerol kinase; E=7e-06 PFAM: PF00370; FGGY family of carbohydrate kinas; E=7.8e-06 PF01869; BadF/BadG/BcrA/BcrD ATPase family; E=0.0012 PF02782; FGGY family of carbohydrate kinas; E=1.4e-16; Belongs t [...]
  
  
  0.918
RB1573
Hypothetical protein.
       0.732
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
     0.669
RB609
Conserved hypothetical protein-putative xylan esterase; PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=2e-08 gb:AAB68821.1; (AF001926) xylan esterase 1 [Thermoanaerobacterium; E=0.001 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.003 COG: XF1745; COG1073 Hydrolases of the alpha/beta superfamily; E=3e-04 PFAM: PF01738; Dienelactone hydrolase family; E=0.53.
 
     0.626
RB502
Hypothetical protein-signal peptide prediction; PMID: 11474104.
  
     0.618
sgaU
Probable hexulose-6-phosphate isomerase; PMID: 7610040 best DB hits: BLAST: swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=0.004 swissprot:P39305; SGAU_ECOLI PUTATIVE HEXULOSE-6-PHOSPHATE; E=0.004 gb:AAG59393.1; AE005652_10 (AE005652) putative; E=0.004 COG: MJ1311; COG1082 Predicted endonucleases; E=4e-04 PFAM: PF02199; Saposin A-type domain; E=0.63.
  
     0.610
RB9002
Hypothetical protein-transmembrane prediction.
  
     0.610
RB3239
Probable D-tagatose 3-epimerase; Best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-13 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=8e-11 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=4e-10 COG: TM0416; COG1082 Predicted endonucleases; E=4e-14.
  
     0.602
RB6431
Hypothetical protein.
  
     0.537
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.