STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1729Similar to Rab-GDP dissociation inhibitor; PMID: 9698324 best DB hits: BLAST: gb:AAC31910.1; (AF076291) Rab-GDP dissociation inhibitor [Gallus; E=0.081 embl:CAA52412.1; (X74401) rab GDI beta [Rattus norvegicus]; E=0.36 gb:AAA78786.1; (L36314) GDP dissociation inhibitor beta [Mus; E=0.36. (120 aa)    
Predicted Functional Partners:
RB1731
PMID: 10710307 best DB hits: BLAST: pir:D81118; conserved hypothetical protein ankyrin-related protein; E=3e-42 pir:C81903; hypothetical protein NMA1343 [imported] - Neisseria; E=9e-28 gb:AAF61702.1; AF222766_1 (AF222766) ankyrin 1 [Bos taurus]; E=1e-05 COG: NMB1133_2; COG0666 Ankyrin repeat proteins; E=7e-05 PFAM: PF00023; Ank repeat; E=0.0093.
       0.569
RB1732
Beta-alanine synthetase; PMID: 10910347 best DB hits: BLAST: pir:H82556; beta-alanine synthetase XF2443 [imported] - Xylella; E=6e-16 pir:G75156; hypothetical protein PAB0277 - Pyrococcus abyssi (strain; E=3e-13 gb:AAF87102.1; AF284573_1 (AF284573) Nit protein 2 [Mus musculus]; E=4e-12 COG: XF2443; COG0388 Predicted amidohydrolase; E=6e-17 PFAM: PF00795; Carbon-nitrogen hydrolase; E=1.2e-40.
       0.417
RB1734
Hypothetical protein.
       0.417
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.