STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1731PMID: 10710307 best DB hits: BLAST: pir:D81118; conserved hypothetical protein ankyrin-related protein; E=3e-42 pir:C81903; hypothetical protein NMA1343 [imported] - Neisseria; E=9e-28 gb:AAF61702.1; AF222766_1 (AF222766) ankyrin 1 [Bos taurus]; E=1e-05 COG: NMB1133_2; COG0666 Ankyrin repeat proteins; E=7e-05 PFAM: PF00023; Ank repeat; E=0.0093. (287 aa)    
Predicted Functional Partners:
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
   
 0.652
dnl1
PMID: 9469931 best DB hits: BLAST: swissprot:P00639; DRN1_BOVIN DEOXYRIBONUCLEASE I PRECURSOR (DNASE; E=6e-11 pdb:3DNI; Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1) -----; E=6e-11 pdb:1ATN; D Chain D, Deoxyribonuclease I Complex With Actin; E=9e-11 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=0.053.
 
 
   0.610
RB2794
Deoxyribonuclease gamma [precursor]; PMID: 9665719 best DB hits: BLAST: gb:AAC64266.1; (AF059612) deoxyribonuclease gamma [Xenopus; E=1e-19 gb:AAB00496.1; (L40823) DNL1L gene product [Homo sapiens]; E=5e-17 gb:AAB17022.1; (U06846) XIB [Homo sapiens]; E=7e-17 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=1.3e-10.
 
 
   0.601
RB10608
Similar to transposase insG for insertion sequence element IS4; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.578
RB4306
Conserved hypothetical protein-putative transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.578
RB4322
Conserved hypothetical protein-putative transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.578
RB5348
Similar to transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.578
RB1729
Similar to Rab-GDP dissociation inhibitor; PMID: 9698324 best DB hits: BLAST: gb:AAC31910.1; (AF076291) Rab-GDP dissociation inhibitor [Gallus; E=0.081 embl:CAA52412.1; (X74401) rab GDI beta [Rattus norvegicus]; E=0.36 gb:AAA78786.1; (L36314) GDP dissociation inhibitor beta [Mus; E=0.36.
       0.569
ftsH-3
Cell division protein FtsH homolog; Best DB hits: BLAST: swissprot:P72991; FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4; E=5e-20 gb:AAG19776.1; (AE005063) cell division cycle protein; Cdc48b; E=9e-20 gb:AAF69154.1; AC007915_6 (AC007915) F27F5.8 [Arabidopsis; E=2e-19 COG: slr1604; COG0465 ATP-dependent Zn proteases; E=4e-21 VNG1472G; COG0464 ATPases of the AAA+ class; E=8e-21 PH0201; COG1222 ATP-dependent 26S proteasome regulatory subunit; E=3e-20 PFAM: PF01695; IstB-like ATP binding protein; E=0.25 PF00910; RNA helicase; E=0.35 PF00004; ATPase family associated with va; E=8.6e-30.
  
 
 0.566
RB1732
Beta-alanine synthetase; PMID: 10910347 best DB hits: BLAST: pir:H82556; beta-alanine synthetase XF2443 [imported] - Xylella; E=6e-16 pir:G75156; hypothetical protein PAB0277 - Pyrococcus abyssi (strain; E=3e-13 gb:AAF87102.1; AF284573_1 (AF284573) Nit protein 2 [Mus musculus]; E=4e-12 COG: XF2443; COG0388 Predicted amidohydrolase; E=6e-17 PFAM: PF00795; Carbon-nitrogen hydrolase; E=1.2e-40.
   
  0.559
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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