STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1814Hypothetical protein. (244 aa)    
Predicted Functional Partners:
galE
Udp-glucose 4-epimerase; PMID: 9679194 best DB hits: BLAST: pir:D75143; udp-glucose 4-epimerase (gale-1) PAB2145 - Pyrococcus; E=8e-42 pir:A71183; probable UDP-glucose 4-epimerase - Pyrococcus horikoshii; E=3e-40 pir:T51252; dTDPglucose 4,6-dehydratase (EC 4.2.1.46) [imported] -; E=4e-37 COG: PAB2145; COG0451 Nucleoside-diphosphate-sugar epimerases; E=8e-43 BH3364; COG1088 dTDP-D-glucose 4,6-dehydratase; E=2e-26 TM0630; COG0451 Nucleoside-diphosphate-sugar epimerases; E=5e-26 PFAM: PF00056; lactate/malate dehydrogenase, NAD b; E=0.011 PF01370; NAD dependent epimerase/dehydratase; E=7.1e-43.
       0.572
pknB-4
Probable serine/threonine-protein kinase; PMID: 8969512 best DB hits: BLAST: embl:CAA18685.1; (AL022602) putative serinethreonine protein; E=3e-23 pir:B70936; probable serinethreonine-specific protein kinase (EC; E=2e-22 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=6e-22 COG: Rv2176; COG0515 Serine/threonine protein kinases; E=2e-23 PFAM: PF00069; Protein kinase domain; E=9.4e-41.
       0.572
RB1809
Similar to replicase; PMID: 8376963 best DB hits: BLAST: ddbj:BAA61806.1; (AB010300) replicase [garlic virus A]; E=0.77.
       0.498
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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