STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1939Probable oxidoreductase; PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=5e-14. (502 aa)    
Predicted Functional Partners:
RB3317
PMID: 9584149 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=3e-13 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-12 embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=2e-08 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=2e-13 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=1.1e-12.
  
     0.762
RB5581
Best DB hits: BLAST: pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=8e-05 gb:AAD38234.1; (U17224) CarF [Pectobacterium carotovorum]; E=0.002 pir:H81703; conserved hypothetical protein TC0422 [imported] -; E=0.016 COG: VCA1077_2; COG1262 Uncharacterized BCR; E=8e-06.
  
     0.758
RB10266
Probable NADH-dependent dyhydrogenase-putative NAD-employing oxidorecutase of the GFO family; Best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=7e-09 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=3e-07 swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=5e-06 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=4.4e-17.
  
     0.757
RB8799
Probable NADH-dependent dyhydrogenase; Best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=6e-11 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=7e-11 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=8e-11 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=6e-12 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=9.9e-20.
  
     0.756
RB3648
Best DB hits: BLAST: pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=3e-07 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-06 ddbj:BAB04206.1; (AP001508) BH0487~unknown conserved protein; E=3e-05 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=6e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=6e-18.
  
     0.747
RB1235
NADH-dependent dehydrogenase; PMID: 10192928 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-11 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-10 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=6e-08 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-12 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=9.8e-25.
  
     0.740
RB9849
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-04.
  
     0.735
RB5290
Probable NADH-dependent dehydrogenase; Best DB hits: BLAST: pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=2e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=6e-07 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=3e-05 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=3e-06 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-18.
  
     0.734
RB9196
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-04.
  
    0.732
RB5365
Probable NADH-dependent dehydrogenase; Best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=4e-10 gb:AAC31181.1; (AF076240) unknown [Rhizobium leguminosarum bv; E=2e-09 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-09 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=5e-10 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=3.1e-15.
  
     0.720
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.