STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1972Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:A70029; hypothetical protein yvaX - Bacillus subtilis -----; E=4e-04 swissprot:Q90805; CNG1_CHICK CYCLIC NUCLEOTIDE GATED CHANNEL, CONE; E=0.52. (424 aa)    
Predicted Functional Partners:
RB1974
Hypothetical protein-transmembrane prediction.
       0.806
RB12048
Best DB hits: BLAST: pir:T49412; hypothetical protein B1D4.270 [imported] - Neurospora; E=0.89 PFAM: PF00432; Prenyltransferase and squalene ox; E=0.026.
  
     0.728
RB13038
Conserved hypothetical protein-putative transglutaminase-like enzyme; PMID: 10452618 best DB hits: BLAST: pir:D75012; hypothetical protein PAB1274 - Pyrococcus abyssi (strain; E=3e-04 gb:AAB91268.1; (AE001110) A. fulgidus predicted coding region; E=0.006 pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=0.011 COG: PAB1274_1; COG1305 Transglutaminase-like enzymes, putative cysteine; E=4e-04 PFAM: PF02553; Cobalt transport protein compo; E=0.37 PF01841; Transglutaminase-like superfam; E=0.00013.
  
     0.722
RB2247
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG19229.1; (AE005019) Vng0754c [Halobacterium sp. NRC-1]; E=9e-06 gb:AAF75279.1; AF265353_1 (AF265353) byssal protein Dpfp1; E=0.21 ddbj:BAA94345.1; (AB035520) parchorin [Oryctolagus cuniculus]; E=0.50 PFAM: PF00089; Trypsin; E=0.58.
  
     0.721
RB6127
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051.
  
     0.675
RB4053
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11759840 best DB hits: BLAST: embl:CAA82877.1; (Z29987) VLA-2 homologue [Mus musculus]; E=0.40 PFAM: PF00092; von Willebrand factor type A do; E=0.33.
  
     0.656
RB10473
Best DB hits: BLAST: pir:D71687; alkaline proteinase secretion protein apre (aprE) RP314; E=0.032 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.053 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.13 COG: RP314; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF01590; GAF domain; E=0.00029 PF00364; Biotin-requiring enzyme; E=0.0022.
  
    0.654
RB9684
Best DB hits: BLAST: pir:F83350; hypothetical protein PA2362 [imported] - Pseudomonas; E=3e-05 pir:G83437; hypothetical protein PA1668 [imported] - Pseudomonas; E=0.006.
  
     0.651
RB5128
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83386; hypothetical protein PA2078 [imported] - Pseudomonas; E=7e-14 swissprot:P55493; Y4IJ_RHISN HYPOTHETICAL 65.5 KD PROTEIN Y4IJ; E=2e-13 swissprot:P55496; Y4IM_RHISN HYPOTHETICAL 47.1 KD PROTEIN Y4IM; E=1e-11 PFAM: PF00034; Cytochrome c; E=0.064.
  
     0.646
RB6971
Hypothetical protein.
  
     0.639
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.