STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2002Hypothetical protein-transmembrane prediction. (77 aa)    
Predicted Functional Partners:
RB2001
Probable glycosyltransferase; PMID: 11371519 best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=2e-10 pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=9e-10 pir:T44601; probable glycosyltransferase [imported] - Rhizobium; E=5e-08 COG: MTH362; COG0438 Predicted glycosyltransferases; E=2e-11 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-18.
       0.671
RB2003
Hypothetical protein-signal peptide and transmembrane prediction.
       0.642
RB2006
Hypothetical protein-transmembrane prediction.
       0.642
RB1999
Hypothetical protein.
       0.547
RB2000
Hypothetical protein.
       0.547
ppdK
Pyruvate,phosphate dikinase; PMID: 2176881 best DB hits: BLAST: pir:F72397; pyruvate,orthophosphate dikinase (EC 2.7.9.1) -; E=0.0 swissprot:P22983; PODK_CLOSY PYRUVATE,PHOSPHATE DIKINASE; E=0.0 pdb:1DIK; Pyruvate Phosphate Dikinase; E=0.0 COG: TM0272; COG0574 Phosphoenolpyruvate synthase; E=0.0 PA3562_3; COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI; E=2e-27 MTH1118; COG0574 Phosphoenolpyruvate synthase; E=1e-22 PFAM: PF01326; Pyruvate phosphate dikinase,; E=1.1e-167 PF00391; PEP-utilizing enzyme, mobile; E=4.1e-37 PF02896; PEP-utilizing enzyme, TIM bar; E=3e-141; Belongs [...]
       0.479
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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