STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2022Conserved hypothetical protein; PMID: 10484179 best DB hits: BLAST: ddbj:BAB06095.1; (AP001515) BH2376~unknown conserved protein; E=4e-48 pir:G69884; conserved hypothetical protein ymdB - Bacillus subtilis; E=3e-46 pir:D75415; conserved hypothetical protein - Deinococcus radiodurans; E=4e-38 COG: BH2376; COG1692 Uncharacterized BCR; E=4e-49 PFAM: PF02640; Uncharacterized BCR, YmdB family COG; E=1.9e-75. (261 aa)    
Predicted Functional Partners:
folD
5,20-methylene-tetrahyrdofolate dehydrogenase (NADP+) / methylentetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
      0.711
rpsA
30S ribosomal protein S1; PMID: 9823893 best DB hits: BLAST: gb:AAD29257.1; AF107093_2 (AF107093) ribosomal protein S1; E=3e-48 gb:AAF64246.1; (AF045481) 30S ribosomal protein S1; E=2e-45 swissprot:Q9ZD28; RS1_RICPR 30S RIBOSOMAL PROTEIN S1 -----; E=3e-45 COG: RP521; COG0539 Ribosomal protein S1; E=3e-46 PFAM: PF00575; S1 RNA binding domain; E=3.6e-06.
       0.498
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.