STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2053Hypothetical protein-transmembrane prediction. (153 aa)    
Predicted Functional Partners:
RB2055
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=0.002 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=0.012 pir:T21759; hypothetical protein F35C5.9 - Caenorhabditis elegans; E=0.012 COG: VCA0172; COG3035 Uncharacterized BCR; E=2e-04 PFAM: PF00092; von Willebrand factor type A domain; E=0.00013.
       0.773
RB2056
Hypothetical protein-transmembrane prediction.
       0.625
RB2052
Hypothetical protein.
       0.572
cpaB
Probable pilus assembly protein CpaB; PMID: 10880436 best DB hits: BLAST: gb:AAF40191.1; AF229646_3 (AF229646) CpaB [Caulobacter crescentus]; E=0.003 pir:A70601; hypothetical protein Rv0990c - Mycobacterium; E=0.18.
  
  
 0.453
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.