STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2055Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=0.002 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=0.012 pir:T21759; hypothetical protein F35C5.9 - Caenorhabditis elegans; E=0.012 COG: VCA0172; COG3035 Uncharacterized BCR; E=2e-04 PFAM: PF00092; von Willebrand factor type A domain; E=0.00013. (402 aa)    
Predicted Functional Partners:
RB2053
Hypothetical protein-transmembrane prediction.
       0.773
RB2056
Hypothetical protein-transmembrane prediction.
       0.625
RB8117
Best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05.
  
     0.593
RB2052
Hypothetical protein.
       0.572
RB1451
Similar to serine/threonine protein kinase related protein; PMID: 9371463 PMID: 11677609 best DB hits: BLAST: gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.043 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.049 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.13 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.005 PFAM: PF01011; PQQ enzyme repeat; E=5.4e-05.
  
     0.555
RB2640
Hypothetical protein-signal peptide prediction.
  
     0.543
RB3371
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: swissprot:Q10552; Y893_MYCTU HYPOTHETICAL 36.1 KDA PROTEIN RV0893C; E=3e-10 swissprot:Q50726; YX99_MYCTU HYPOTHETICAL 38.1 KDA PROTEIN RV3399; E=2e-08 pir:A70645; hypothetical protein Rv0726c - Mycobacterium; E=6e-08 COG: Rv0893c; COG3315 O-Methyltransferase involved in polyketide; E=3e-11 PFAM: PF02409; Domain of unknown function DUF142; E=7e-05; Belongs to the UPF0677 family.
  
     0.501
RB8928
Conserved hypothetical protein-putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Best DB hits: BLAST: pir:S74905; hypothetical protein slr2060 - Synechocystis sp. (strain; E=4e-10 ddbj:BAB05354.1; (AP001512) BH1635~unknown conserved protein; E=0.004 gb:AAF73599.1; (AE002342) 1-acyl-sn-glycerol-3-phosphate; E=0.004 COG: BH1635; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; E=4e-04 PFAM: PF01553; Acyltransferase; E=2.7e-09.
  
     0.500
RB7455
Conserved hypothetical protein; PMID: 20196006 best DB hits: BLAST: gb:AAF57876.1; (AE003803) CG6564 gene product [Drosophila; E=0.010 embl:CAA96576.1; (Z72495) ZP2 [Carassius auratus]; E=0.47.
  
     0.493
RB2680
PMID: 11953415 best DB hits: BLAST: gb:AAC45602.1; (U75949) suppressor for copper-sensitivity C; E=0.011 pir:S75747; hypothetical protein slr0565 - Synechocystis sp; E=0.032 ddbj:BAA20493.1; (AB004696) 27kDa outer membrane protein; E=0.11.
  
     0.490
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.