STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB206Hypothetical protein-signal peptide prediction. (35 aa)    
Predicted Functional Partners:
RB207
Similar to endosomal protein; PMID: 11930014 best DB hits: BLAST: pir:S44243; endosomal protein - human ----- embl: CAA55632.1; E=0.71 gb:AAA79121.1; (L40157) endosome-associated protein [Homo; E=0.73 swissprot:P02566; MYSB_CAEEL MYOSIN HEAVY CHAIN B (MHC B) -----; E=0.82 PFAM: PF01882; Protein of unknown function DUF58; E=0.11.
       0.491
RB210
Hypothetical protein-transmembrane prediction.
       0.491
RB203
Putative oxidoreductase-possibly Aldo/keto reductase; PMID: 2498333 best DB hits: BLAST: pir:T04984; hypothetical protein T16L1.160 - Arabidopsis thaliana; E=3e-59 gb:AAF54729.1; (AE003694) CG18547 gene product [Drosophila; E=3e-44 gb:AAF54731.1; (AE003694) CG3397 gene product [Drosophila; E=4e-36 COG: YMR041c; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=9e-22 TM1183; COG1453 Predicted oxidoreductases of the aldo/keto reductase; E=1e-14 BS_yccK; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=2e-14 PFAM: PF00248; Aldo/keto reductase family; E=1.3e-14.
       0.457
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.