STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2080Hypothetical protein. (46 aa)    
Predicted Functional Partners:
RB2081
X-Pro dipeptidyl-peptidase; PMID: 7793970 best DB hits: BLAST: gb:AAG60941.1; AF322013_60 (AF322013) ID587 [Bradyrhizobium; E=1e-105 pir:S66261; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -; E=2e-23 ddbj:BAB10391.1; (AB006701) dipeptidyl peptidase IV-like protein; E=2e-23 COG: XF0015; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=2e-11 PFAM: PF00930; Dipeptidyl peptidase IV (DPP IV); E=3.8e-06 PF01738; Dienelactone hydrolase family; E=0.0042.
       0.572
RB2078
Conserved hypothetical protein-possibly prolineracemase; PMID: 10984043 best DB hits: BLAST: pir:G83487; hypothetical protein PA1268 [imported] - Pseudomonas; E=6e-68 gb:AAF97423.1; AF195522_1 (AF195522) B-cell mitogen precursor; E=2e-22 embl:CAB71312.1; (AJ130879) proline racemase [Clostridium; E=4e-18 COG: VNG0332C; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=0.002.
       0.547
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.