STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2107Hypothetical protein. (93 aa)    
Predicted Functional Partners:
RB2110
Probable multidrug resistance protein norM; PMID: 8590279 best DB hits: BLAST: gb:AAG27731.1; AF312031_1 (AF312031) multi-drug efflux transporter; E=5e-14 swissprot:Q55364; Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896; E=1e-13 pir:E82527; multidrug efflux protein XF2686 [imported] - Xylella; E=3e-13 COG: slr0896; COG0534 Na+-driven multidrug efflux pump; E=1e-14 PFAM: PF01554; Uncharacterized membrane protein fam; E=1.6e-15.
       0.773
RB2105
Hypothetical protein-signal peptide and transmembrane prediction.
       0.572
citB
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.543
speE
Putative spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.511
RB2116
Hypothetical protein.
       0.441
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.