STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2125Hypothetical protein-signal peptide prediction. (228 aa)    
Predicted Functional Partners:
RB2123
Hypothetical protein.
       0.773
RB2121
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:D75557; conserved hypothetical protein - Deinococcus radiodurans; E=8e-57 pir:S77243; hypothetical protein slr1363 - Synechocystis sp. (strain; E=1e-32 pir:F83213; conserved hypothetical protein PA3455 [imported] -; E=9e-28 COG: DR0132; COG2326 Uncharacterized BCR; E=8e-58.
       0.752
RB4702
Probable lipase/esterase; PMID: 10509949 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=6e-08 swissprot:Q04457; EST1_CAEEL GUT ESTERASE PRECURSOR (NON-SPECIFIC; E=9e-06 pir:T32061; gut-specific carboxylesterase ges-1 - Caenorhabditis; E=9e-06 COG: DR0133; COG0657 Acetyl esterase; E=6e-09.
 
 
    0.446
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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