STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2175Hypothetical protein-signal peptide and transmembrane prediction. (98 aa)    
Predicted Functional Partners:
RB2174
Probable transcriptional regulator; PMID: 1558950 best DB hits: BLAST: gb:AAB38544.1; (L41661) srrB [Synechococcus sp.]; E=5e-09 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=2e-08 gb:AAD51348.1; AF173226_5 (AF173226) SmeR [Stenotrophomonas; E=7e-08 COG: RP237_1; COG0784 CheY-like receiver domains; E=7e-09 PA2523; COG0745 Response regulators consisting of a CheY-like; E=9e-08 VC0622_4; COG0784 CheY-like receiver domains; E=9e-08 PFAM: PF00072; Response regulator receiver doma; E=1.1e-10.
       0.773
RB2176
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: pir:E83085; conserved hypothetical protein PA4488 [imported] -; E=0.81.
       0.773
RB2178
Hypothetical protein.
       0.762
RB2173
Hypothetical protein-transmembrane prediction.
       0.543
RB2179
Hypothetical protein-transmembrane prediction.
       0.400
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.