STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB218Hypothetical protein; PMID: 11743194. (470 aa)    
Predicted Functional Partners:
RB213
Hypothetical protein-signal peptide prediction.
 
     0.883
RB10051
Hypothetical protein-transmembrane prediction.
  
     0.775
RB11276
Hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.775
RB11742
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF02030; Hypothetical mycoplasma lipopro; E=0.82.
  
     0.775
RB12124
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: gb:AAF73802.1; AF154033_1 (AF154033) surface protein PspC; E=0.82.
  
     0.775
RB12155
Hypothetical protein-signal peptide prediction.
  
     0.775
RB13124
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.775
RB2688
Hypothetical protein-transmembrane prediction.
  
     0.775
RB2693
Hypothetical protein.
  
     0.775
RB2845
Hypothetical protein-transmembrane prediction.
  
     0.775
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.