STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2237Hypothetical protein. (83 aa)    
Predicted Functional Partners:
RB2238
Flavohemoprotein; PMID: 8125952 best DB hits: BLAST: swissprot:P39662; HMPA_ALCEU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=7e-29 swissprot:P49852; HMPA_BACSU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=2e-26 swissprot:P26353; HMPA_SALTY FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=2e-26 COG: BS_hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=1e-27 hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=5e-25 BH1058_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=5e-23 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=3.5e-24 PF01794; Ferric reductase like transmemb; E=0.76 P [...]
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.