STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2425Hypothetical protein. (102 aa)    
Predicted Functional Partners:
RB2420
Probable myo-inositol-2-dehydrogenase; Best DB hits: BLAST: gb:AAD50452.1; AF170704_2 (AF170704) SpcB [Streptomyces; E=1e-04 gb:AAF63338.1; AF244574_1 (AF244574) myo-inositol-2-dehydrogenase; E=3e-04 gb:AAD13550.1; (AF080235) oxidoreductase homolog [Streptomyces; E=0.001 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=2e-04 PFAM: PF01408; Oxidoreductase family, NAD-bind; E=5.8e-11.
       0.773
RB2424
Hypothetical protein.
       0.773
RB2418
Hypothetical protein-signal peptide prediction.
       0.572
RB2416
PMID: 10567266 best DB hits: BLAST: pir:A75496; conserved hypothetical protein - Deinococcus radiodurans; E=2e-04 pir:C71139; hypothetical protein PH0326 - Pyrococcus horikoshii; E=2e-04 pir:A72430; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.002 COG: DR0620_2; COG1305 Transglutaminase-like enzymes, putative cysteine; E=1e-05 PFAM: PF01841; Transglutaminase-like superfam; E=0.014.
       0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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