STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2428Hypothetical protein-transmembrane prediction. (228 aa)    
Predicted Functional Partners:
dnaK
Chaperone protein HscC; PMID: 9735342 best DB hits: BLAST: swissprot:P77319; HSCC_ECOLI CHAPERONE PROTEIN HSCC (HSC62); E=1e-92 gb:AAG54984.1; AE005244_2 (AE005244) putative dnaK protein; E=3e-91 embl:CAA06391.1; (AJ005129) dnaK [Thermotoga maritima]; E=3e-88 COG: ybeW; COG0443 Molecular chaperone; E=1e-93 PFAM: PF01869; BadF/BadG/BcrA/BcrD ATPase fa; E=0.37 PF00012; Hsp70 protein; E=9.1e-147.
       0.791
RB2431
Hypothetical protein-transmembrane prediction.
       0.773
RB2432
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: gb:AAD20116.1; (AC006201) unknown protein [Arabidopsis thaliana]; E=0.030 pir:T16263; hypothetical protein F35D11.3 - Caenorhabditis elegans; E=0.096 pir:T39047; hypothetical protein SPAC6F6.13c - fission yeast; E=0.12.
       0.557
RB2426
Conserved hypothetical protein; PMID: 8905232 best DB hits: BLAST: swissprot:P77381; YBES_ECOLI HYPOTHETICAL 55.3 KDA PROTEIN IN; E=0.093 gb:AAG54981.1; AE005243_10 (AE005243) putative enzyme of; E=0.31 gb:AAG53090.1; (AF284647) phosphoprotein [Newcastle disease; E=0.67.
       0.546
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.