STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2485Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=5e-20 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-10 swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=1e-09 COG: TM0622; COG0438 Predicted glycosyltransferases; E=4e-21 PFAM: PF00534; Glycosyl transferases group 1; E=1.1e-22. (400 aa)    
Predicted Functional Partners:
RB2482
Similar to hexosyltransferase; PMID: 11259647 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=0.001 gb:AAD19925.1; (AF105116) putative glucosyl transferase; E=0.002 embl:CAB75373.1; (AL139298) putative transferase [Streptomyces; E=0.002 COG: TM0622; COG0438 Predicted glycosyltransferases; E=9e-05 PFAM: PF00534; Glycosyl transferases group 1; E=1e-09.
 
     0.810
RB2484
Putative glycosyltransferase; PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1; AF076290_7 (AF076290) putative glycosyltransferase; E=5e-17 gb:AAB84956.1; (AE000829) LPS biosynthesis RfbU related protein; E=3e-05 pir:H69158; LPS biosynthesis RfbU related protein - Methanobacterium; E=3e-05 COG: MTH450; COG0438 Predicted glycosyltransferases; E=3e-06 PFAM: PF00534; Glycosyl transferases group 1; E=5.8e-18.
 
     0.802
RB2480
Hypothetical protein.
       0.773
RB2487
Conserved hypothetical protein; PMID: 11214968 best DB hits: BLAST: pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=0.011 gb:AAB95303.1; (AC003105) unknown protein [Arabidopsis thaliana]; E=0.023 COG: sll1530; COG0500 SAM-dependent methyltransferases; E=0.001.
       0.773
RB2001
Probable glycosyltransferase; PMID: 11371519 best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=2e-10 pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=9e-10 pir:T44601; probable glycosyltransferase [imported] - Rhizobium; E=5e-08 COG: MTH362; COG0438 Predicted glycosyltransferases; E=2e-11 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-18.
  
     0.766
RB5991
Best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=6e-16 swissprot:O05083; YG98_HAEIN PUTATIVE GLYCOSYL TRANSFERASE HI1698; E=9e-16 embl:CAA72352.1; (Y11648) wlaC [Campylobacter jejuni]; E=5e-15 COG: MTH362; COG0438 Predicted glycosyltransferases; E=5e-17 PFAM: PF00534; Glycosyl transferases group 1; E=1.8e-36.
  
     0.764
RB10614
PMID: 11157937 PMID: 11481430 best DB hits: BLAST: swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-17 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=2e-16 ddbj:BAB07431.1; (AP001519) BH3712~unknown conserved protein; E=3e-14 COG: DR0713; COG0438 Predicted glycosyltransferases; E=3e-17 PFAM: PF00534; Glycosyl transferases group 1; E=1e-30.
  
     0.759
RB2479
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S77382; hypothetical protein sll1456 - Synechocystis sp. (strain; E=3e-12 pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-08 pir:H70669; hypothetical protein Rv2955c - Mycobacterium; E=4e-07 COG: sll1456; COG0500 SAM-dependent methyltransferases; E=3e-13.
       0.737
RB2471
Conserved hypothetical protein-putative poly(glycerol-phosphate) alpha-glucosyltransferase; PMID: 8905231 best DB hits: BLAST: pir:S74778; hypothetical protein slr1077 - Synechocystis sp. (strain; E=5e-34 gb:AAD43836.1; AF076290_6 (AF076290) putative mannosyltransferase; E=4e-16 embl:CAB43611.1; (AJ239004) galactosyl transferase [Streptococcus; E=9e-11 COG: slr1077; COG0438 Predicted glycosyltransferases; E=5e-35 PFAM: PF00534; Glycosyl transferases group 1; E=5e-21.
  
     0.619
RB2489
Hypothetical protein.
       0.561
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.