STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2490Hypothetical protein. (43 aa)    
Predicted Functional Partners:
RB2489
Hypothetical protein.
       0.773
RB2491
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB92986.1; (AL357152) hypothetical protein SCH18.03c; E=0.19.
       0.773
RB2492
Hypothetical protein.
       0.572
RB2480
Hypothetical protein.
       0.561
RB2482
Similar to hexosyltransferase; PMID: 11259647 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=0.001 gb:AAD19925.1; (AF105116) putative glucosyl transferase; E=0.002 embl:CAB75373.1; (AL139298) putative transferase [Streptomyces; E=0.002 COG: TM0622; COG0438 Predicted glycosyltransferases; E=9e-05 PFAM: PF00534; Glycosyl transferases group 1; E=1e-09.
       0.561
RB2484
Putative glycosyltransferase; PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1; AF076290_7 (AF076290) putative glycosyltransferase; E=5e-17 gb:AAB84956.1; (AE000829) LPS biosynthesis RfbU related protein; E=3e-05 pir:H69158; LPS biosynthesis RfbU related protein - Methanobacterium; E=3e-05 COG: MTH450; COG0438 Predicted glycosyltransferases; E=3e-06 PFAM: PF00534; Glycosyl transferases group 1; E=5.8e-18.
       0.561
RB2485
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=5e-20 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-10 swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=1e-09 COG: TM0622; COG0438 Predicted glycosyltransferases; E=4e-21 PFAM: PF00534; Glycosyl transferases group 1; E=1.1e-22.
       0.561
RB2487
Conserved hypothetical protein; PMID: 11214968 best DB hits: BLAST: pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=0.011 gb:AAB95303.1; (AC003105) unknown protein [Arabidopsis thaliana]; E=0.023 COG: sll1530; COG0500 SAM-dependent methyltransferases; E=0.001.
       0.561
RB2479
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S77382; hypothetical protein sll1456 - Synechocystis sp. (strain; E=3e-12 pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-08 pir:H70669; hypothetical protein Rv2955c - Mycobacterium; E=4e-07 COG: sll1456; COG0500 SAM-dependent methyltransferases; E=3e-13.
       0.537
RB2477
Hypothetical protein.
       0.413
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.