STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2493Best DB hits: BLAST: pir:D69143; LPS biosynthesis RfbU related protein - Methanobacterium; E=8e-18 embl:CAB01935.1; (Z79692) ExpE4 [Sinorhizobium meliloti]; E=2e-16 embl:CAB01932.1; (Z79692) ExpE7 [Sinorhizobium meliloti]; E=4e-13 COG: MTH338; COG0438 Predicted glycosyltransferases; E=8e-19 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-20. (444 aa)    
Predicted Functional Partners:
RB2471
Conserved hypothetical protein-putative poly(glycerol-phosphate) alpha-glucosyltransferase; PMID: 8905231 best DB hits: BLAST: pir:S74778; hypothetical protein slr1077 - Synechocystis sp. (strain; E=5e-34 gb:AAD43836.1; AF076290_6 (AF076290) putative mannosyltransferase; E=4e-16 embl:CAB43611.1; (AJ239004) galactosyl transferase [Streptococcus; E=9e-11 COG: slr1077; COG0438 Predicted glycosyltransferases; E=5e-35 PFAM: PF00534; Glycosyl transferases group 1; E=5e-21.
  
     0.665
RB2473
Probable hexosyltransferase; PMID: 10382966 best DB hits: BLAST: pir:D72511; probable hexosyltransferase (EC 2.4.1.-) APE2066; E=2e-09 ddbj:BAB06407.1; (AP001516); E=1e-07 pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=2e-06 COG: APE2066; COG0438 Predicted glycosyltransferases; E=1e-10 PFAM: PF00534; Glycosyl transferases group 1; E=1.2e-25.
 
     0.649
RB2494
Hypothetical protein.
       0.572
RB2495
Hypothetical protein.
       0.572
RB2485
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=5e-20 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-10 swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=1e-09 COG: TM0622; COG0438 Predicted glycosyltransferases; E=4e-21 PFAM: PF00534; Glycosyl transferases group 1; E=1.1e-22.
  
     0.515
RB2484
Putative glycosyltransferase; PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1; AF076290_7 (AF076290) putative glycosyltransferase; E=5e-17 gb:AAB84956.1; (AE000829) LPS biosynthesis RfbU related protein; E=3e-05 pir:H69158; LPS biosynthesis RfbU related protein - Methanobacterium; E=3e-05 COG: MTH450; COG0438 Predicted glycosyltransferases; E=3e-06 PFAM: PF00534; Glycosyl transferases group 1; E=5.8e-18.
 
     0.512
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
 
  
 0.484
RB2503
Probable flippase; PMID: 10222209 best DB hits: BLAST: ddbj:BAA77727.1; (AB008676) flippase [Escherichia coli]; E=3e-05 gb:AAG57097.1; AE005429_8 (AE005429) O antigen flippase Wzx; E=3e-05 embl:CAA64437.1; (X94981) aceE [Acetobacter xylinus]; E=0.17.
  
    0.467
RB2474
Probable hexosyltransferase; PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=3e-22 pir:C70036; capsular polysaccharide biosynthesis homolog yveN -; E=7e-12 pir:A82676; conserved hypothetical protein XF1470 [imported] -; E=2e-10 COG: TM0622; COG0438 Predicted glycosyltransferases; E=3e-23 PFAM: PF00534; Glycosyl transferases group 1; E=6.1e-38.
  
     0.440
RB4333
Probable galactosyltransferase; Best DB hits: BLAST: pir:S75877; hypothetical protein slr1166 - Synechocystis sp. (strain; E=1e-14 pir:A75033; probable hexosyltransferase (EC 2.4.1.-) PAB0827; E=2e-09 pir:D72511; probable hexosyltransferase (EC 2.4.1.-) APE2066; E=5e-09 COG: slr1166; COG0438 Predicted glycosyltransferases; E=1e-15 PAB2292; COG0297 Glycogen synthase; E=4e-05 BH1683; COG0438 Predicted glycosyltransferases; E=5e-05 PFAM: PF00534; Glycosyl transferases group 1; E=2.1e-12.
  
     0.403
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.