STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2500UDP-glucose 4-epimerase; PMID: 11337471 best DB hits: BLAST: gb:AAK04309.1; AE006259_3 (AE006259) UDP-glucose 4-epimerase; E=1e-23 swissprot:Q57664; GALE_METJA PUTATIVE UDP-GLUCOSE 4-EPIMERASE; E=1e-23 gb:AAG18701.1; (AE004975) UDP-glucose 4-epimerase; GalE2; E=3e-23 COG: MJ0211; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-24 MTH631; COG1087 UDP-glucose 4-epimerase; E=5e-20 PH0378; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-19 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.64 PF00106; short chain dehydrogenase; E=0.0027 PF01370; NAD dependent epimerase/deh [...] (306 aa)    
Predicted Functional Partners:
ugdH
UDP-glucose 6-dehydrogenase; PMID: 8938413 best DB hits: BLAST: pir:T51527; UDP-glucose dehydrogenase-like protein - Arabidopsis; E=1e-155 ddbj:BAB02581.1; (AP001309) UDP-glucose dehydrogenase; E=1e-151 swissprot:Q96558; UGDH_SOYBN UDP-GLUCOSE 6-DEHYDROGENASE (UDP-GLC; E=1e-150 COG: aq_024; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=2e-61 VC0918; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; E=1e-27 PA3540; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=8e-26 PFAM: PF00984; UDP-glucose/GDP-mannose dehydro; E=2.6e-180; Belongs to the UDP-glucose/GDP-mannose dehydrogena [...]
 
 0.935
galE-3
UDP-glucose 4-epimerase; PMID: 11058132 best DB hits: BLAST: swissprot:Q9KDV3; GALE_BACHD UDP-GLUCOSE 4-EPIMERASE; E=9e-99 pir:A69184; UDP-glucose 4-epimerase - Methanobacterium; E=3e-98 gb:AAK06077.1; AE006428_1 (AE006428) UDP-glucose 4-epimerase (EC; E=2e-93 COG: BH1108; COG1087 UDP-glucose 4-epimerase; E=1e-100 TM0509; COG0451 Nucleoside-diphosphate-sugar epimerases; E=9e-41 MPN257; COG1087 UDP-glucose 4-epimerase; E=6e-38 PFAM: PF02716; Isoflavone reductase; E=0.13 PF02254; KTN NAD-binding domain; E=0.22 PF00984; UDP-glucose/GDP-mannose dehyd; E=0.0085.
 
0.927
hasC
PMID: 7499387 best DB hits: BLAST: pir:A75096; UTP--glucose-1-phosphate uridylyltransferase (EC; E=3e-20 gb:AAD32398.1; AAD32398 (AF065404) pXO1-94 [Bacillus anthracis]; E=4e-19 swissprot:Q54713; HASC_STRPY UTP--GLUCOSE-1-PHOSPHATE; E=2e-17 COG: PAB0771; COG1210 UDP-glucose pyrophosphorylase; E=3e-21 PAB0784; COG1209 dTDP-glucose pyrophosphorylase; E=3e-04 PFAM: PF00483; Nucleotidyl transferase; E=0.014.
 
  
 0.915
galT
Galactose-1-phosphate uridylyltransferase; PMID: 10360571 best DB hits: BLAST: pir:A72322; hypothetical protein TM0896 - Thermotoga maritima; E=3e-47 ddbj:BAB09478.1; (AB012246) galactose-1-phosphate uridyl; E=1e-36 gb:AAF64398.1; AF148553_2 (AF148553) adenylylsulfate:phosphate; E=1e-35 COG: TM0896; COG1085 Galactose-1-phosphate uridylyltransferase; E=3e-48.
   
 
 0.902
RB2499
Glycosyl transferase; PMID: 11206551 best DB hits: BLAST: gb:AAG57095.1; AE005429_6 (AE005429) glycosyl transferase; E=1e-20 gb:AAD47915.1; AF127522_2 (AF127522) putative; E=6e-18 pir:E70346; mannosyltransferase B - Aquifex aeolicus -----gb:; E=1e-06 COG: aq_515; COG0438 Predicted glycosyltransferases; E=1e-07 PFAM: PF00534; Glycosyl transferases group 1; E=5.9e-06.
 
    0.799
sqdC
Sulfolipid biosynthesis protein SqdC; PMID: 10830266 best DB hits: BLAST: gb:AAF35290.1; AF194444_3 (AF194444) SqdC [Sinorhizobium meliloti]; E=2e-18 pir:D81275; probable nucleotide sugar dehydratase Cj1319 [imported]; E=3e-15 pir:D70696; probable dtdp-glucose 4 - Mycobacterium tuberculosis; E=9e-15 COG: Cj1319; COG0451 Nucleoside-diphosphate-sugar epimerases; E=3e-16 aq_1069; COG1087 UDP-glucose 4-epimerase; E=1e-12 MTH1789; COG1088 dTDP-D-glucose 4,6-dehydratase; E=3e-11 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.014 PF01370; NAD dependent epimerase/dehydratase; E=5.8e-16.
  
     0.771
RB2498
Conserved hypothetical protein-putative methyltransferase; PMID: 8843436 best DB hits: BLAST: embl:CAB92986.1; (AL357152) hypothetical protein SCH18.03c; E=7e-16 embl:CAB57489.1; (Y18930) hypothetical protein [Sulfolobus; E=3e-13 pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-08 COG: sll1530; COG0500 SAM-dependent methyltransferases; E=1e-09 APE1011; COG2518 Protein-L-isoaspartate carboxylmethyltransferase; E=0.001.
       0.741
RB2502
Probable maltose O-acetyltransferase; PMID: 9384377 best DB hits: BLAST: swissprot:P37515; MAA_BACSU PROBABLE MALTOSE O-ACETYLTRANSFERASE; E=6e-08 pir:E82411; hexapeptide-repeat containing-acetyltransferase VCA0836; E=2e-07 swissprot:Q58464; YA64_METJA HYPOTHETICAL PROTEIN MJ1064 -----; E=4e-07 COG: BS_yyaI; COG0110 Acetyltransferases (the isoleucine patch; E=5e-09 lacA; COG0110 Acetyltransferases (the isoleucine patch superfamily); E=3e-04 BH3001; COG0110 Acetyltransferases (the isoleucine patch; E=4e-04 PFAM: PF00132; Bacterial transferase hexapeptide (f; E=0.29.
  
    0.633
RB2503
Probable flippase; PMID: 10222209 best DB hits: BLAST: ddbj:BAA77727.1; (AB008676) flippase [Escherichia coli]; E=3e-05 gb:AAG57097.1; AE005429_8 (AE005429) O antigen flippase Wzx; E=3e-05 embl:CAA64437.1; (X94981) aceE [Acetobacter xylinus]; E=0.17.
  
    0.628
RB2501
Hypothetical protein.
       0.623
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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