STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2530Conserved hypothetical protein-putative oxidoreductase; Best DB hits: BLAST: gb:AAG19823.1; (AE005067) Vng1537c [Halobacterium sp. NRC-1]; E=4e-27 pir:E75148; hypothetical protein PAB2116 - Pyrococcus abyssi (strain; E=9e-25 gb:AAG20566.1; (AE005127) Vng2502c [Halobacterium sp. NRC-1]; E=8e-24 COG: VNG1537C; COG1078 HD superfamily phosphohydrolases; E=4e-28. (471 aa)    
Predicted Functional Partners:
RB2529
Hypothetical protein-signal peptide and transmembrane prediction.
       0.789
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
       0.701
RB2533
Probable integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAB88464.1; (AL353815) putative integral membrane protein; E=2e-07 pir:S74882; hypothetical protein sll1151 - Synechocystis sp. (strain; E=3e-07 gb:AAB90453.1; (AE001050) conserved hypothetical protein; E=1e-04 COG: sll1151; COG1808 Uncharacterized ACR; E=3e-08.
       0.701
RB10346
Similar to N,N-dimethyltransferase; Best DB hits: BLAST: gb:AAK04327.1; AE006260_10 (AE006260) HYPOTHETICAL PROTEIN; E=0.003 gb:AAC68678.1; (AF079762) N,N-dimethyltransferase [Streptomyces; E=0.052 pir:G75136; menaquinone biosynthesis methlytransferase related; E=0.13.
  
 
   0.552
RB2534
Hypothetical protein.
       0.516
RB8677
Best DB hits: BLAST: pir:S76850; hypothetical protein - Synechocystis sp. (strain PCC; E=0.56.
  
     0.500
RB10797
Best DB hits: BLAST: pir:A71552; probable lysophospholipase esterase - Chlamydia; E=4e-08 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=6e-08 pir:D72098; serine esterase, probable CP0488 [imported] -; E=1e-06 COG: CT136; COG0400 Predicted esterase; E=4e-09 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.68.
  
     0.464
RB2525
Hypothetical protein; Best DB hits: BLAST: gb:AAB99952.1; (AF035443) wee1 homolog [Xenopus laevis]; E=0.31.
       0.447
RB2640
Hypothetical protein-signal peptide prediction.
  
     0.444
RB1950
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.435
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.