STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2592Hypothetical protein. (197 aa)    
Predicted Functional Partners:
eutM
Probable ethanolamine utilization protein EutM; PMID: 7868611 best DB hits: BLAST: swissprot:P37448; PDUA_SALTY PROPANEDIOL UTILIZATION PROTEIN; E=2e-11 gb:AAD39009.1; (AF026270) PduJ [Salmonella enterica serovar; E=2e-11 gb:AAB84107.2; (AF026270) PduA [Salmonella enterica serovar; E=2e-11 PFAM: PF00936; Bacterial microcompartments pr; E=1.2e-43.
       0.551
RB2587
Hypothetical protein.
       0.551
RB2588
Conserved hypothetical protein-putative transcriptional regulator; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
       0.551
RB2590
Putative aga operon transcriptional repressor; PMID: 10931310 best DB hits: BLAST: embl:CAB96011.1; (AL360055) putative transcriptional regulatory; E=3e-28 embl:CAC21630.1; (AL512667) putative deoR-family transcriptional; E=6e-25 ddbj:BAB05272.1; (AP001512) transcriptional regulator (DeoR; E=1e-24 COG: BH1553; COG1349 Transcriptional regulators of sugar metabolism; E=1e-25 PFAM: PF00392; Bacterial regulatory proteins, gnt; E=0.00039 PF01022; Bacterial regulatory protein, arsR; E=0.028 PF00455; Bacterial regulatory proteins, deo; E=2.1e-68.
       0.551
RB2591
Hypothetical protein.
       0.551
RB2593
Hypothetical protein-transmembrane prediction; PMID: 20196006 best DB hits: BLAST: swissprot:P29939; YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO; E=0.55 PFAM: PF00892; Integral membrane protein DUF6; E=7.1e-05.
       0.550
RB2596
Best DB hits: BLAST: gb:AAC98350.1; (AF075462) ADP-ribosylation factor-directed GTPase; E=0.22 gb:AAF55676.2; (AE003726) CG7240 gene product [Drosophila; E=0.39.
       0.469
RB2585
Hypothetical protein; Best DB hits: PFAM: PF00936; Bacterial microcompartments pr; E=1.2e-26.
       0.421
RB2602
Hypothetical protein.
       0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.