STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2596Best DB hits: BLAST: gb:AAC98350.1; (AF075462) ADP-ribosylation factor-directed GTPase; E=0.22 gb:AAF55676.2; (AE003726) CG7240 gene product [Drosophila; E=0.39. (997 aa)    
Predicted Functional Partners:
RB2602
Hypothetical protein.
       0.658
RB2593
Hypothetical protein-transmembrane prediction; PMID: 20196006 best DB hits: BLAST: swissprot:P29939; YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO; E=0.55 PFAM: PF00892; Integral membrane protein DUF6; E=7.1e-05.
       0.648
RB2592
Hypothetical protein.
       0.469
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.