STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhAProbable ribonuclease HI; PMID: 1650910 best DB hits: BLAST: pir:A83418; ribonuclease H PA1815 [imported] - Pseudomonas; E=1e-04 pdb:1RBR; Ribonuclease H (E.C.3.1.26.4) Mutant With His 62; E=2e-04 swissprot:P23329; RNH_SALTY RIBONUCLEASE HI (RNASE HI); E=5e-04 COG: PA1815; COG0328 Ribonuclease HI; E=1e-05. (240 aa)    
Predicted Functional Partners:
rnH
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 
0.906
RB6493
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
 
     0.650
glgB
1,4-alpha-glucan branching enzyme (glycogen branching enzyme); Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.612
RB2636
Hypothetical protein.
       0.572
RB4511
Sensory transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 
 0.551
RB2634
Hypothetical protein.
       0.537
RB10924
Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 
 0.521
RB6605
Probable phospholipase C-beta-2; PMID: 1644792 best DB hits: BLAST: gb:AAA36453.1; (M95678) phospholipase C-beta-2 [Homo sapiens]; E=2e-04 gb:AAG51636.1; AC018908_2 (AC018908) unknown protein; 69131-60853; E=0.001 pir:F71318; conserved hypothetical protein TP0494 - syphilis; E=0.001 COG: TP0494; COG1579 Zn-ribbon protein, possibly nucleic acid-binding; E=1e-04 NMB1472; COG0542 ATPases with chaperone activity, ATP-binding domain; E=0.008 PFAM: PF02591; Uncharacterized ACR, COG1579; E=0.88.
  
  
 0.495
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.475
RB9330
Probable fibrinogen-binding protein homolog-putative involved in cell-cell interaction; PMID: 99098700 PMID: 98261511 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=9e-46 gb:AAF72509.1; AF245041_1 (AF245041) putative cell-surface adhesin; E=1e-37 embl:CAB75732.1; (Y18653) bone sialoprotein-binding protein; E=6e-24.
  
     0.470
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.