STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2673Serine/threonine protein kinase; PMID: 1835671 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-43 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=7e-43 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=5e-41 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-44 PFAM: PF00069; Protein kinase domain; E=6e-61. (504 aa)    
Predicted Functional Partners:
RB3245
Protein phosphatase 1; PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=3e-27 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=5e-26 embl:CAA10712.1; (AJ132604) pppL protein [Lactococcus lactis]; E=2e-25 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-27 PFAM: PF00481; Protein phosphatase 2C; E=1.2e-09.
  
   0.801
Pph1
Probable protein phosphatase 1; PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=9e-32 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=4e-28 pir:H75265; conserved hypothetical protein - Deinococcus radiodurans; E=5e-28 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-29 PFAM: PF00481; Protein phosphatase 2C; E=4.9e-09.
 
   0.801
RB2671
Conserved hypothetical protein; PMID: 7482699 best DB hits: BLAST: ddbj:BAA91718.1; (AK001486) unnamed protein product [Homo; E=0.007 ddbj:BAB08640.1; (AB009048) gene_id:K15E6.5~unknown protein; E=0.012 pir:T00095; hypothetical protein KIAA0470 - human ----- ddbj:; E=0.052 PFAM: PF00498; FHA domain; E=1.8e-12.
   
   0.735
RB2675
Hypothetical protein.
       0.658
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.658
RB2667
Hypothetical protein-putative transmembrane protein.
       0.555
RB2669
Hypothetical protein-putative transmembrane protein.
       0.555
RB8026
Best DB hits: BLAST: pir:E82768; conserved hypothetical protein XF0752 [imported] -; E=4e-30 pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=1e-26 gb:AAF47337.1; (AE003467) CG7049 gene product [Drosophila; E=5e-19 COG: XF0752_2; COG1262 Uncharacterized BCR; E=9e-30.
 
 
    0.513
RB2679
Hypothetical protein; Best DB hits: PFAM: PF01982; Domain of unknown function DUF120; E=0.28.
       0.493
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.