STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2701N-acetylgalactosamine 6-sulfate sulfatase; PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-25 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-23 gb:AAG58881.1; AE005599_13 (AE005599) putative sulfatase; E=1e-22 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=4e-23 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=3e-04 PFAM: PF00884; Sulfatase; E=2.5e-44. (564 aa)    
Predicted Functional Partners:
RB2700
Hypothetical protein.
       0.773
RB3353
Sialidase [Precursor]; PMID: 1400240 PMID: 8591030 best DB hits: BLAST: swissprot:Q02834; NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE); E=3e-40 pdb:1EUR; Sialidase ----- pdb: 1EUS Sialidase Complexed; E=3e-40 pdb:1EUU; Sialidase Or Neuraminidase, Large 68kd Form -----; E=3e-40 PFAM: PF02012; BNR repeat; E=0.1.
    
  0.650
nanH
Neuraminidase precursor; PMID: 8093075 best DB hits: BLAST: ddbj:BAA05853.1; (D28493) neuraminidase precursor [Bacteroides; E=4e-90 pir:JC2500; exo-alpha-sialidase (EC 3.2.1.18) precursor -; E=8e-89 swissprot:P31206; NANH_BACFR SIALIDASE (NEURAMINIDASE) -----; E=2e-68 PFAM: PF02012; BNR repeat; E=0.038.
    
  0.650
RB2702
Kappa-carrageenase [precursor]; PMID: 8112578 best DB hits: BLAST: swissprot:P43478; CGKA_ALTCA KAPPA-CARRAGEENASE PRECURSOR -----; E=1e-61 gb:AAC27890.1; (AF007559) kappa-carrageenase precursor [Zobellia; E=3e-56 pir:T18265; endo-1,3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium; E=8e-07 COG: TM0024; COG2273 Beta-glucanase/Beta-glucan synthetase; E=1e-05 PFAM: PF00722; Glycosyl hydrolases family 16; E=4.5e-07.
       0.555
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.