STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB283Hypothetical protein. (81 aa)    
Predicted Functional Partners:
RB282
Conserved hypothetical protein-putative ATPase; Best DB hits: BLAST: ddbj:BAB03825.1; (AP001507) BH0106~unknown conserved protein; E=2e-52 swissprot:Q06754; YACL_BACSU HYPOTHETICAL 40.9 KD PROTEIN IN; E=4e-51 swissprot:Q48762; YOR6_LISMO HYPOTHETICAL 39.5 KD PROTEIN (ORF6); E=8e-51 COG: BH0106; COG1855 ATPases of the PilT family; E=2e-53 PFAM: PF01850; PIN domain; E=0.11.
       0.773
dgt
dGTP triphosphohydrolase; PMID: 2826481 best DB hits: BLAST: gb:AAD53927.1; AF179611_11 (AF179611) dGTP triphosphohydrolase; E=5e-51 swissprot:Q9ZE82; DGTP_RICPR DEOXYGUANOSINETRIPHOSPHATE; E=3e-48 pir:F75449; dGTP triphosphohydrolase-related protein - Deinococcus; E=2e-47 COG: RP064; COG0232 dGTP triphosphohydrolase; E=3e-49 MJ1154; COG1078 HD superfamily phosphohydrolases; E=4e-04 PFAM: PF01966; HD domain; E=2.7e-10; Belongs to the dGTPase family. Type 2 subfamily.
       0.576
RB285
Hypothetical protein.
       0.512
groS
Probable GroES chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family.
       0.504
RB287
Hypothetical protein.
       0.416
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.