STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2837Hypothetical protein-putative transmembrane protein; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.14. (614 aa)    
Predicted Functional Partners:
RB6400
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00397; WW domain; E=0.54.
  
     0.775
RB7074
Conserved hypothetical protein-putative permease of ABC transporter; PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.003 gb:AAG18647.1; (AE004970) Vng0003c [Halobacterium sp. NRC-1]; E=0.015 embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=0.024 COG: MTH695; COG0577 Predicted permease; E=3e-04 PFAM: PF01890; CbiG; E=0.096 PF02687; Predicted permease; E=5.7e-06 PF00951; Arterivirus GL envelope glycop; E=0.081.
  
     0.774
RB749
PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=5e-05 pir:JC4881; polyvinyl-alcohol dehydrogenase (acceptor) (EC; E=0.017 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.076 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-06 PFAM: PF01011; PQQ enzyme repeat; E=0.1 PF00993; Class II histocompatibility ant; E=0.47 PF01011; PQQ enzyme repeat; E=0.00012.
  
     0.774
RB9261
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA37082.1; (AB022095) ORF2 [Streptomyces griseus]; E=5e-45 embl:CAC04221.1; (AL391515) conserved hypothetical protein; E=9e-35 pir:G69070; coenzyme F390 synthetase I - Methanobacterium; E=0.004 COG: MTH1528; COG1541 Coenzyme F390 synthetase; E=4e-04 PFAM: PF00031; Cystatin domain; E=0.0015.
  
     0.774
RB11142
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.34.
  
     0.773
RB11660
PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.001 pir:T26310; hypothetical protein W09D6.1 - Caenorhabditis elegans; E=0.64 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.047.
  
     0.773
RB12068
Probable serine/threonine protein kinase afsK; PMID: 8063104 PMID: 8635757 PMID: 12000953 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=2e-06 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=1e-05 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=1e-05 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-07 PFAM: PF01011; PQQ enzyme repeat; E=0.00048.
  
     0.773
yfgL
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P77774; YFGL_ECOLI HYPOTHETICAL 41.9 KD PROTEIN IN; E=0.006 gb:AAG57622.1; AE005480_9 (AE005480) putative dehydrogenase; E=0.007 gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.056 COG: yfgL; COG1520 Uncharacterized proteins of WD40-like repeat family; E=6e-04.
  
     0.773
RB614
PMID: 7601151 PMID: 8654419 best DB hits: BLAST: pir:S52317; quinohemoprotein ethanol dehydrogenase (EC 1.1.99.-); E=0.006 gb:AAF86335.1; (AF277373) terahydrofurfuryl alcohol dehydrogenase; E=0.36 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.76 PFAM: PF01011; PQQ enzyme repeat; E=0.29.
  
     0.773
RB9262
Conserved hypothetical protein-putative NAD-dependent aldehyde dehydrogenase; Best DB hits: BLAST: embl:CAC04220.1; (AL391515) conserved hypothetical protein; E=1e-21 ddbj:BAA37083.1; (AB022095) ORF3 [Streptomyces griseus]; E=8e-13 pir:E70961; hypothetical protein Rv0223c - Mycobacterium; E=4e-06 COG: Rv0223c; COG1012 NAD-dependent aldehyde dehydrogenases; E=3e-07 PFAM: PF00171; Aldehyde dehydrogenase family; E=0.21.
  
     0.772
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.