STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2842Hypothetical protein-transmembrane prediction. (574 aa)    
Predicted Functional Partners:
RB2840
Similar to RNA polymerase sigma factor nccH; PMID: 7579621 best DB hits: BLAST: swissprot:P46358; RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR; E=0.001 swissprot:Q44583; NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH; E=0.11 embl:CAB65647.1; (AL136149) probable ECF-family sigma factor; E=0.14 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=1.8e-11.
  
   0.801
RB2845
Hypothetical protein-transmembrane prediction.
       0.773
RB2848
Hypothetical protein-putative related to sulfatases.
       0.586
RB2839
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:G82190; conserved hypothetical protein VC1503 [imported] -; E=5e-59 pir:H83504; hypothetical protein PA1116 [imported] - Pseudomonas; E=2e-57 ddbj:BAB05048.1; (AP001511) BH1329~unknown conserved protein in; E=2e-17 COG: VC1503; COG2996 Uncharacterized BCR; E=5e-60; Belongs to the CvfB family.
       0.455
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.