STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2885Conserved hypothetical protein; PMID: 10192388 best DB hits: BLAST: pir:B72102; conserved hypothetical protein CP0535 [imported] -; E=8e-04 pir:A71548; hypothetical protein CT178 - Chlamydia trachomatis; E=0.68 PFAM: PF00901; Orbivirus outer capsid protein VP5; E=0.16. (219 aa)    
Predicted Functional Partners:
galE-2
Probable UDP-glucose epimerase; PMID: 9427545 best DB hits: BLAST: embl:CAA66078.1; (X97448) galE [Brucella melitensis]; E=2e-07 gb:AAC46054.1; (U78089) UDP-glucose epimerase [Brucella abortus]; E=4e-07 pir:A70392; UDP-glucose-4-epimerase - Aquifex aeolicus ----- gb:; E=5e-06 COG: aq_1069; COG1087 UDP-glucose 4-epimerase; E=5e-07 aq_1335; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-05 BS_galE; COG1087 UDP-glucose 4-epimerase; E=3e-05 PFAM: PF00106; short chain dehydrogenase; E=7.4e-05 PF01370; NAD dependent epimerase/dehydratase; E=0.0054.
     0.995
RB2886
Hypothetical protein-putative transmembrane protein.
       0.805
RB2883
Hypothetical protein.
       0.773
RB2889
Similar to ATP synthase alpha subunit; PMID: 10852478 best DB hits: BLAST: embl:CAB67160.1; (AJ271079) ATP synthase alpha subunit [Oenothera; E=0.72.
       0.773
RB11033
PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) putative ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12.
  
     0.718
RB11027
Probable ABC transport system integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) putative ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13.
  
     0.699
RB5832
Hypothetical protein.
  
     0.628
RB7341
Similar to surface-associated protein cshA precursor; PMID: 93125117 PMID: 1479886 PMID: 7891560 best DB hits: BLAST: pir:S61441; surface-associated protein cshA precursor - Streptococcus; E=0.006 PFAM: PF00404; Dockerin type I repeat; E=0.039.
  
    0.617
RB3034
Hypothetical protein-signal peptide prediction.
  
     0.611
RB5524
Conserved hypothetical protein; PMID: 11759840 best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.17.
  
    0.583
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.