STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2893Hypothetical protein-signal peptide and transmembrane prediction. (702 aa)    
Predicted Functional Partners:
RB2894
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF02472; Biopolymer transport protein ExbD/To; E=0.005.
       0.773
RB2895
Probable Biopolymer transport exbD protein; PMID: 2670903 best DB hits: BLAST: pir:S74451; hypothetical protein sll1405 - Synechocystis sp. (strain; E=1e-08 swissprot:P18784; EXBD_ECOLI BIOPOLYMER TRANSPORT EXBD PROTEIN; E=4e-07 gb:AAC78852.1; (AF087669) ExbD [Bordetella bronchiseptica]; E=4e-06 COG: sll1405; COG0848 Biopolymer transport protein; E=1e-09 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=1.1e-11.
       0.773
RB2897
Conserved hypothetical protein-putative methyltransferase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05775.1; (AP001514) BH2056~unknown conserved protein in; E=3e-20 pir:T45542; hypothetical protein [imported] - Klebsiella pneumoniae; E=8e-13 gb:AAG10237.1; AF201699_2 (AF201699) phospholipid; E=8e-08 COG: BH2056; COG0030 Dimethyladenosine transferase (rRNA methylation); E=2e-21 APE1011; COG2518 Protein-L-isoaspartate carboxylmethyltransferase; E=0.008.
       0.572
RB2900
Hypothetical protein.
       0.537
RB2901
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00432; Prenyltransferase and squalene ox; E=0.6.
       0.527
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.