STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2907Hypothetical protein. (141 aa)    
Predicted Functional Partners:
RB2908
Conserved hypothetical protein; PMID: 11029001 best DB hits: BLAST: embl:CAC11769.1; (AL445064) conserved hypothetical protein; E=5e-08 pir:F70426; conserved hypothetical protein aq_1457 - Aquifex; E=5e-06 pir:H70323; hypothetical protein aq_262 - Aquifex aeolicus -----; E=5e-05 COG: Ta0630; COG0500 SAM-dependent methyltransferases; E=5e-09 PFAM: PF02874; ATP synthase alpha/beta family; E=0.21 PF01135; Protein-L-isoaspartate(D-aspar; E=0.52.
       0.773
yacH
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA90847.1; (AB031211) YacH [Bacillus halodurans] -----; E=2e-08 swissprot:P37569; YACH_BACSU HYPOTHETICAL 21.0 KD PROTEIN IN; E=5e-08 gb:AAC44444.1; (U40604) ORF2; putative 19 kDa protein [Listeria; E=2e-05 PFAM: PF02151; UvrB/uvrC motif; E=4.7e-08.
  
     0.693
RB2905
Signal peptidase-like protein; PMID: 10484179 best DB hits: BLAST: ddbj:BAB03764.1; (AP001507) signal peptidase-like protein; E=5e-36 swissprot:P37541; YAAT_BACSU HYPOTHETICAL 31.2 KD PROTEIN IN; E=5e-36 gb:AAK04498.1; AE006276_13 (AE006276) HYPOTHETICAL PROTEIN; E=3e-28 COG: BH0045; COG1774 Uncharacterized ACR, PSP1 homologs; E=5e-37.
       0.684
yacI
Creatine kinase-putative ATP:guanido kinase (YacI); Catalyzes the specific phosphorylation of arginine residues in proteins; Belongs to the ATP:guanido phosphotransferase family.
  
     0.679
RB4597
Probable malate permease; PMID: 8953720 best DB hits: BLAST: embl:CAA57770.2; (X82326) malate permease [Oenococcus oeni]; E=0.16 pir:H72378; conserved hypothetical protein - Thermotoga maritima; E=0.19.
  
     0.602
RB6977
UDP-N-acetylhexosamine pyrophosphorylase; PMID: 9603950 best DB hits: BLAST: gb:AAB31210.2; (S73498) AgX-1 antigen [Homo sapiens]; E=9e-64 swissprot:Q16222; UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE; E=9e-64 gb:AAF52387.1; (AE003613) BcDNA:LD24639 gene product [Drosophila; E=1e-63 PFAM: PF01128; Uncharacterized protein family UPF00; E=0.091 PF01704; UTP--glucose-1-phosphate uridylyltra; E=3.5e-37.
  
     0.600
RB8945
Hypothetical protein-putative conserved hypothetical protein.
  
     0.570
RB2349
Hypothetical protein.
  
     0.560
RB2910
Hypothetical protein-transmembrane prediction.
       0.548
RB3160
Hypothetical protein-putative conserved hypothetical protein.
  
     0.544
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.