STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2930Hypothetical protein. (61 aa)    
Predicted Functional Partners:
RB2931
Conserved hypothetical protein-putative acetyltransferase; PMID: 10984043 best DB hits: BLAST: ddbj:BAB04418.1; (AP001509) ribosomal-protein-alanine; E=5e-15 ddbj:BAB05587.1; (AP001513) BH1868~unknown conserved protein; E=2e-14 pir:E83153; conserved hypothetical protein PA3945 [imported] -; E=2e-14 COG: BH0699; COG1670 Acetyltransferases, including N-acetylases of; E=5e-16 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.1e-14.
       0.773
RB2932
Hypothetical protein.
       0.773
RB2929
Hypothetical protein-putative transmembrane protein.
       0.645
RB2928
Conserved hypothetical protein-putative acetyltransferase; PMID: 8892832 best DB hits: BLAST: gb:AAC44553.1; (U34346) unknown [Paracoccus denitrificans]; E=6e-33 embl:CAB61920.1; (AL133278) putative acetyltransferase; E=3e-28 swissprot:Q09927; YAL4_SCHPO HYPOTHETICAL 23.8 KD PROTEIN; E=6e-16 COG: BH2104; COG0456 Acetyltransferases; E=0.007 PFAM: PF00583; Acetyltransferase (GNAT) family; E=2.2e-16.
       0.455
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.