STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2971Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: embl:CAB61271.1; (AL132991) hypothetical protein SCF55.01c; E=1e-04 pir:F72378; conserved hypothetical protein - Thermotoga maritima; E=0.002 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=0.10 COG: TM0422; COG1082 Predicted endonucleases; E=2e-04. (346 aa)    
Predicted Functional Partners:
RB2970
PMID: 8340421 best DB hits: BLAST: ddbj:BAA34057.1; (AB019196) phosphatidylethanolamine; E=3e-21 swissprot:Q05197; PMTA_RHOSH PHOSPHATIDYLETHANOLAMINE; E=1e-20 pir:E72392; ubiquinonemenaquinone biosynthesis-related protein -; E=7e-08 COG: TM0318; COG0500 SAM-dependent methyltransferases; E=7e-09 PA5063; COG2226 Methylase involved in ubiquinone/menaquinone; E=1e-05 PA3171; COG2227; E=1e-04 PFAM: PF01209; ubiE/COQ5 methyltransferase f; E=4.9e-06.
       0.773
strI
PMID: 1654502 best DB hits: BLAST: swissprot:P09400; STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=5e-06 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=0.014 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=4e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.4e-05.
  
    0.727
RB8266
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAK03329.1; (AE006164) unknown [Pasteurella multocida]; E=1e-04 swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=2e-04 pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=0.002 COG: MJ1311; COG1082 Predicted endonucleases; E=2e-05.
  
     0.675
RB10266
Probable NADH-dependent dyhydrogenase-putative NAD-employing oxidorecutase of the GFO family; Best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=7e-09 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=3e-07 swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=5e-06 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=4.4e-17.
  
    0.662
RB10503
Probable lipopolysaccharide biosynthesis protein BplA-putative NADH-dependent oxidoreductase; Best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-06 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01118; Semialdehyde dehydrogenase, NA; E=0.37 PF01408; Oxidoreductase family, NAD-bin; E=6e-09 PF02894; Oxidoreductase family, C-termi; E=0.52.
  
    0.640
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
    0.632
RB3330
Probable dehydrogenase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-06 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=3e-05 swissprot:Q44258; CBAC_ALCSB 1-CARBOXY-3-CHLORO-3,4-DIHYDROXYCYCLO; E=6e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-07 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=4.6e-08.
  
    0.619
RB6799
Hypothetical protein-transmembrane prediction.
  
    0.599
RB1939
Probable oxidoreductase; PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=5e-14.
  
    0.596
RB9849
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-04.
  
     0.569
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.