STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2986Oligo-1,6-glucosidase; PMID: 9692189 best DB hits: BLAST: pir:JE0181; oligo-1,6-glucosidase (EC 3.2.1.10) - Bacillus; E=1e-143 ddbj:BAB18518.1; (AB003697) oligo-1,6-glucosidase [Bacillus; E=1e-143 gb:AAD50603.1; AF096282_1 (AF096282) alpha-glucosidase [Thermus; E=1e-141 COG: DR1375; COG0366 Glycosidases; E=1e-140 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.8e-99. (586 aa)    
Predicted Functional Partners:
malQ
4-alpha-glucanotransferase; PMID: 10677288 best DB hits: BLAST: swissprot:O87172; MALQ_THEAQ 4-ALPHA-GLUCANOTRANSFERASE; E=1e-119 swissprot:P72785; MALQ_SYNY3 4-ALPHA-GLUCANOTRANSFERASE; E=1e-118 swissprot:P29851; MALQ_STRPN 4-ALPHA-GLUCANOTRANSFERASE; E=1e-114 COG: sll1676; COG1640 4-alpha-glucanotransferase; E=1e-119 PFAM: PF02446; 4-alpha-glucanotransferase; E=3.9e-185.
 
 
 0.932
RB5196
Alpha-amylase, amylosucrase; PMID: 9882648 PMID: 10411273 best DB hits: BLAST: embl:CAA09772.1; (AJ011781) amylosucrase [Neisseria; E=1e-165 pir:C75457; alpha-amlyase - Deinococcus radiodurans (strain R1); E=1e-123 pir:E75322; probable trehalose synthase - Deinococcus radiodurans; E=4e-41 COG: DR0933; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.5e-26.
 
  
 
0.928
RB2160
Alpha-amylase; PMID: 2453362 best DB hits: BLAST: swissprot:P09961; AMY1_DICTH ALPHA-AMYLASE 1 (1,4-ALPHA-D-GLUCAN; E=1e-120 ddbj:BAA22063.1; (D88253) 4-alpha-glucanotransferase; E=1e-114 ddbj:BAA22062.1; (D87907) 4-alpha-glucanotransferase [Pyrococcus; E=1e-112 COG: PAB0118; COG1449 Alpha-amylase/alpha-mannosidase; E=1e-111 Rv3031; COG1543 Uncharacterized ACR; E=1e-04.
    
 0.912
RB5832
Hypothetical protein.
  
 
 0.910
RB10507
Alpha-glucosidase; PMID: 8955399 best DB hits: BLAST: gb:AAC44671.1; (U66897) alpha-glucosidase [Bacteroides; E=4e-42 PFAM: PF01729; Quinolinate phosphoribosyl transfera; E=0.71.
   
  0.907
scrK
Probable fructokinase; PMID: 1809835 PMID: 10411273 best DB hits: BLAST: gb:AAG60871.1; AF322012_176 (AF322013) ID402 [Bradyrhizobium; E=5e-08 gb:AAK03933.1; (AE006222) unknown [Pasteurella multocida]; E=2e-06 pir:G75112; fructokinase (EC 2.7.1.4) PAB0482 - Pyrococcus abyssi; E=2e-05 COG: PAB0482; COG0524 Sugar kinases, ribokinase family; E=2e-06 PFAM: PF00294; pfkB family carbohydrate kinase; E=2.5e-12.
    
 0.903
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.762
RB2985
Conserved hypothetical protein-putative glycosyltransferase; PMID: 8905231 best DB hits: BLAST: pir:S75877; hypothetical protein slr1166 - Synechocystis sp. (strain; E=1e-18 swissprot:Q48453; YC07_KLEPN HYPOTHETICAL 41.2 KD PROTEIN IN CPS; E=5e-09 pir:T46662; alpha 1,2 N-acetylglucosamine transferase [imported] -; E=7e-08 COG: slr1166; COG0438 Predicted glycosyltransferases; E=1e-19 PFAM: PF00534; Glycosyl transferases group 1; E=7.8e-18.
   
   0.719
RB2990
Conserved hypothetical protein-putative glycosyltransferase; PMID: 9537320 best DB hits: BLAST: pir:B70393; hypothetical protein aq_1080 - Aquifex aeolicus -----; E=2e-11 pir:E83367; hypothetical protein PA2236 [imported] - Pseudomonas; E=8e-09 pir:S77553; probable hexosyltransferase (EC 2.4.1.-) sll1971; E=4e-07 COG: aq_1080; COG0438 Predicted glycosyltransferases; E=2e-12 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-15.
   
   0.700
RB2988
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=7e-25 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=4e-17 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=6e-10 COG: TM1852; COG2152 Uncharacterized ACR; E=7e-26.
       0.694
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.