STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2991Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=2e-36 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=9e-34 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=5e-18 COG: TM1852; COG2152 Uncharacterized ACR; E=2e-37. (391 aa)    
Predicted Functional Partners:
RB2990
Conserved hypothetical protein-putative glycosyltransferase; PMID: 9537320 best DB hits: BLAST: pir:B70393; hypothetical protein aq_1080 - Aquifex aeolicus -----; E=2e-11 pir:E83367; hypothetical protein PA2236 [imported] - Pseudomonas; E=8e-09 pir:S77553; probable hexosyltransferase (EC 2.4.1.-) sll1971; E=4e-07 COG: aq_1080; COG0438 Predicted glycosyltransferases; E=2e-12 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-15.
 
   
 0.953
RB2985
Conserved hypothetical protein-putative glycosyltransferase; PMID: 8905231 best DB hits: BLAST: pir:S75877; hypothetical protein slr1166 - Synechocystis sp. (strain; E=1e-18 swissprot:Q48453; YC07_KLEPN HYPOTHETICAL 41.2 KD PROTEIN IN CPS; E=5e-09 pir:T46662; alpha 1,2 N-acetylglucosamine transferase [imported] -; E=7e-08 COG: slr1166; COG0438 Predicted glycosyltransferases; E=1e-19 PFAM: PF00534; Glycosyl transferases group 1; E=7.8e-18.
 
     0.877
RB2988
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=7e-25 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=4e-17 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=6e-10 COG: TM1852; COG2152 Uncharacterized ACR; E=7e-26.
 
   
0.848
RB2992
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
       0.773
RB2993
Hypothetical protein.
       0.773
RB2995
Hypothetical protein.
       0.773
RB2997
Hypothetical protein.
       0.773
RB2986
Oligo-1,6-glucosidase; PMID: 9692189 best DB hits: BLAST: pir:JE0181; oligo-1,6-glucosidase (EC 3.2.1.10) - Bacillus; E=1e-143 ddbj:BAB18518.1; (AB003697) oligo-1,6-glucosidase [Bacillus; E=1e-143 gb:AAD50603.1; AF096282_1 (AF096282) alpha-glucosidase [Thermus; E=1e-141 COG: DR1375; COG0366 Glycosidases; E=1e-140 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.8e-99.
       0.694
RB2998
Probable squalene-hopene cyclase; PMID: 7894707 best DB hits: BLAST: pir:T35404; probable squalene-hopene cyclase - Streptomyces; E=4e-04 swissprot:P33990; SQHC_ZYMMO SQUALENE--HOPENE CYCLASE -----; E=0.002 pir:T45142; squalene-hopene cyclase [imported] - Methylococcus; E=0.003 COG: slr2089; COG1657 Squalene cyclase; E=0.002.
       0.496
RB5256
Cellulase; PMID: 1955860 best DB hits: BLAST: pir:B72216; endoglucanase - Thermotoga maritima (strain MSB8); E=7e-85 swissprot:P25472; GUND_CLOCE ENDOGLUCANASE D PRECURSOR; E=3e-52 swissprot:P16218; GUNH_CLOTM ENDOGLUCANASE H PRECURSOR (EGH); E=5e-49 COG: TM1751; COG2730 Endoglucanase; E=6e-86 PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=5.3e-47.
  
     0.435
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.