STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3023Similar to protease ecfE; PMID: 11689431 best DB hits: BLAST: ddbj:BAA09768.1; (D63481) The KIAA0147 gene product is related to; E=0.009 gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=0.038 swissprot:P37764; YAEL_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN; E=0.056 COG: yaeL; COG0750 Predicted membrane-associated Zn-dependent proteases 1; E=0.005 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=0.00026. (155 aa)    
Predicted Functional Partners:
RB5363
Flavodoxin; PMID: 1991710 best DB hits: BLAST: swissprot:O67866; FLAV_AQUAE FLAVODOXIN ----- pir: F70479; E=3e-48 swissprot:P18855; FLAV_CLOAB FLAVODOXIN ----- pir: A38177; E=2e-13 pir:G82110; Trp repressor-binding protein VC2166 [imported] - Vibrio; E=6e-13 COG: aq_2096; COG0655 Multimeric flavodoxin WrbA; E=3e-49 AF1520; COG0426 Uncharacterized flavoproteins; E=0.006 PFAM: PF00258; Flavodoxin; E=1.4e-08.
   
  
 0.756
RB3029
Hypothetical protein-transmembrane prediction.
       0.462
RB3020
Hypothetical protein-putative transmembrane protein.
       0.456
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.